OHI British Columbia | OHI Science | Citation policy
read in some data A and data B. Modify some things, and save as layer 1.
This sources a script that modifies another new layer (tableC) and saves it as table2 and table3, external to the direct Rmd path. It also sources a separate script that reads a previously-saved layer (table 1) and gapfills, saving as table1a.
sourced script reads in layers 1a, 2, and 3, and does some stuff, and saves the results as layers D and E.
| run_id | run_tag | run_date | parent_fn | file_loc | filetype | commit_url | commit_author | commit_date | uncommitted_changes | elapsed_time | memory_use | sys_info | ses_info | base_pkgs | attached_pkgs | rdf_subject | rdf_object | rdf_predicate | run_hash |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | ~/github/ohibc/rmd_testing/tableA.csv | input | https://github.com/OHI-Science/ohibc/commit/8b48c047ef11e01d13c8b61e83e8edc6cce99cf9 | Casey O’Hara ohara@nceas.ucsb.edu | Sat Apr 30 12:01:16 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/tableA.csv | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | prov:used | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | ~/tableA2.csv | input | no version control info found | NA | NA | TRUE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/tableA2.csv | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | prov:used | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | ~/github/ohibc/rmd_testing/tableB.csv | input | https://github.com/OHI-Science/ohibc/commit/00b6e10615d39b60a92958f7d8887c9e1091af54 | Casey O’Hara ohara@nceas.ucsb.edu | Sat Apr 30 10:25:32 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/tableB.csv | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | prov:used | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | ~/github/ohibc/rmd_testing/table1.csv | output | Previous commit: https://github.com/OHI-Science/ohibc/commit/893b6768bfa73aae999c60b5c61cdfd2e501944e | Casey O’Hara ohara@nceas.ucsb.edu | Fri Nov 13 11:03:56 2015 -0800 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | ~/github/ohibc/rmd_testing/table1.csv | prov:wasGeneratedBy | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/1_data_prep_sample.R | ~/github/ohibc/rmd_testing/tableC.csv | input | https://github.com/OHI-Science/ohibc/commit/00b6e10615d39b60a92958f7d8887c9e1091af54 | Casey O’Hara ohara@nceas.ucsb.edu | Sat Apr 30 10:25:32 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/tableC.csv | ~/github/ohibc/rmd_testing/1_data_prep_sample.R | prov:used | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/1_data_prep_sample.R | ~/github/ohibc/rmd_testing/table3.csv | output | Previous commit: https://github.com/OHI-Science/ohibc/commit/a7e123bbd5a648fafcb65ca901de0086c7e595eb | Casey O’Hara ohara@nceas.ucsb.edu | Tue May 3 16:14:15 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/1_data_prep_sample.R | ~/github/ohibc/rmd_testing/table3.csv | prov:wasGeneratedBy | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/1_data_prep_sample.R | ~/github/ohibc/rmd_testing/table2.csv | output | Previous commit: https://github.com/OHI-Science/ohibc/commit/a7e123bbd5a648fafcb65ca901de0086c7e595eb | Casey O’Hara ohara@nceas.ucsb.edu | Tue May 3 16:14:15 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/1_data_prep_sample.R | ~/github/ohibc/rmd_testing/table2.csv | prov:wasGeneratedBy | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/1a_gapfill.R | ~/github/ohibc/rmd_testing/table1.csv | input | https://github.com/OHI-Science/ohibc/commit/893b6768bfa73aae999c60b5c61cdfd2e501944e | Casey O’Hara ohara@nceas.ucsb.edu | Fri Nov 13 11:03:56 2015 -0800 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/table1.csv | ~/github/ohibc/rmd_testing/1a_gapfill.R | prov:used | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/1a_gapfill.R | ~/github/ohibc/rmd_testing/table1a.csv | output | Previous commit: https://github.com/OHI-Science/ohibc/commit/a7e123bbd5a648fafcb65ca901de0086c7e595eb | Casey O’Hara ohara@nceas.ucsb.edu | Tue May 3 16:14:15 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/1a_gapfill.R | ~/github/ohibc/rmd_testing/table1a.csv | prov:wasGeneratedBy | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/1_data_prep_sample.R | ~/github/ohibc/rmd_testing/1a_gapfill.R | sourced_script | https://github.com/OHI-Science/ohibc/commit/725220e3bd1b4cc62bf54e26091504ca5aff6b0e | Casey O’Hara ohara@nceas.ucsb.edu | Tue May 3 17:03:26 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/1_data_prep_sample.R | ~/github/ohibc/rmd_testing/1a_gapfill.R | prov:wasExecutedBy | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | ~/github/ohibc/rmd_testing/1_data_prep_sample.R | sourced_script | https://github.com/OHI-Science/ohibc/commit/c265b263de2b0d301dc5e251417e6447e2d42fde | Casey O’Hara ohara@nceas.ucsb.edu | Thu May 5 12:26:36 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | ~/github/ohibc/rmd_testing/1_data_prep_sample.R | prov:wasExecutedBy | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/2_model_sample.R | ~/github/ohibc/rmd_testing/table1a.csv | input | https://github.com/OHI-Science/ohibc/commit/a7e123bbd5a648fafcb65ca901de0086c7e595eb | Casey O’Hara ohara@nceas.ucsb.edu | Tue May 3 16:14:15 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/table1a.csv | ~/github/ohibc/rmd_testing/2_model_sample.R | prov:used | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/2_model_sample.R | ~/github/ohibc/rmd_testing/table2.csv | input | https://github.com/OHI-Science/ohibc/commit/a7e123bbd5a648fafcb65ca901de0086c7e595eb | Casey O’Hara ohara@nceas.ucsb.edu | Tue May 3 16:14:15 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/table2.csv | ~/github/ohibc/rmd_testing/2_model_sample.R | prov:used | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/2_model_sample.R | ~/github/ohibc/rmd_testing/table3.csv | input | https://github.com/OHI-Science/ohibc/commit/a7e123bbd5a648fafcb65ca901de0086c7e595eb | Casey O’Hara ohara@nceas.ucsb.edu | Tue May 3 16:14:15 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/table3.csv | ~/github/ohibc/rmd_testing/2_model_sample.R | prov:used | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/2_model_sample.R | ~/github/ohibc/rmd_testing/tableD.csv | output | Previous commit: https://github.com/OHI-Science/ohibc/commit/a7e123bbd5a648fafcb65ca901de0086c7e595eb | Casey O’Hara ohara@nceas.ucsb.edu | Tue May 3 16:14:15 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/2_model_sample.R | ~/github/ohibc/rmd_testing/tableD.csv | prov:wasGeneratedBy | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/2_model_sample.R | ~/github/ohibc/rmd_testing/tableE.csv | output | Previous commit: https://github.com/OHI-Science/ohibc/commit/a7e123bbd5a648fafcb65ca901de0086c7e595eb | Casey O’Hara ohara@nceas.ucsb.edu | Tue May 3 16:14:15 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/2_model_sample.R | ~/github/ohibc/rmd_testing/tableE.csv | prov:wasGeneratedBy | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | ~/github/ohibc/rmd_testing/2_model_sample.R | sourced_script | https://github.com/OHI-Science/ohibc/commit/725220e3bd1b4cc62bf54e26091504ca5aff6b0e | Casey O’Hara ohara@nceas.ucsb.edu | Tue May 3 17:03:26 2016 -0700 | FALSE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | ~/github/ohibc/rmd_testing/2_model_sample.R | prov:wasExecutedBy | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| 24 | standard run | Thu May 5 12:35:55 2016 | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | parent_script | https://github.com/OHI-Science/ohibc/commit/c265b263de2b0d301dc5e251417e6447e2d42fde | Casey O’Hara ohara@nceas.ucsb.edu | Thu May 5 12:26:36 2016 -0700 | TRUE | 4.558 | NA | System: Darwin, Release: 14.5.0. Machine: x86_64. User: caseyohara. | R version: R version 3.2.4 (2016-03-10), Platform: x86_64-apple-darwin13.4.0, Running under: OS X 10.10.5 (Yosemite). | Attached base packages: stats, graphics, grDevices, utils, datasets, methods, base | Other attached packages: stringr_1.0.0, readr_0.2.2, dplyr_0.4.3 | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | ~/github/ohibc/rmd_testing/./0_sample_script.Rmd | prov:wasDerivedFrom | 17f7dda5322432bc18624f3988f80d63290ec7d6 |
| file_name | file_dir | filetype | uncomm_chgs | commit_hash |
|---|---|---|---|---|
| table1.csv | /Users/caseyohara/github/ohibc/rmd_testing | input | FALSE | 893b676 |
| table1a.csv | /Users/caseyohara/github/ohibc/rmd_testing | input | FALSE | a7e123b |
| table2.csv | /Users/caseyohara/github/ohibc/rmd_testing | input | FALSE | a7e123b |
| table3.csv | /Users/caseyohara/github/ohibc/rmd_testing | input | FALSE | a7e123b |
| tableA.csv | /Users/caseyohara/github/ohibc/rmd_testing | input | FALSE | 8b48c04 |
| tableA2.csv | /Users/caseyohara | input | TRUE | NA |
| tableB.csv | /Users/caseyohara/github/ohibc/rmd_testing | input | FALSE | 00b6e10 |
| tableC.csv | /Users/caseyohara/github/ohibc/rmd_testing | input | FALSE | 00b6e10 |
| table1.csv | /Users/caseyohara/github/ohibc/rmd_testing | output | FALSE | 893b676 |
| table1a.csv | /Users/caseyohara/github/ohibc/rmd_testing | output | FALSE | a7e123b |
| table2.csv | /Users/caseyohara/github/ohibc/rmd_testing | output | FALSE | a7e123b |
| table3.csv | /Users/caseyohara/github/ohibc/rmd_testing | output | FALSE | a7e123b |
| tableD.csv | /Users/caseyohara/github/ohibc/rmd_testing | output | FALSE | a7e123b |
| tableE.csv | /Users/caseyohara/github/ohibc/rmd_testing | output | FALSE | a7e123b |
| 0_sample_script.Rmd | /Users/caseyohara/github/ohibc/rmd_testing/. | parent_script | TRUE | c265b26 |
| 1_data_prep_sample.R | /Users/caseyohara/github/ohibc/rmd_testing | sourced_script | FALSE | c265b26 |
| 1a_gapfill.R | /Users/caseyohara/github/ohibc/rmd_testing | sourced_script | FALSE | 725220e |
| 2_model_sample.R | /Users/caseyohara/github/ohibc/rmd_testing | sourced_script | FALSE | 725220e |